Locus Rank
3

Gene

Id
5
Gene Name
C10ORF32
Duplicated
False
Maternal
True
Gene Not Within Locus (Nearby
False
Gene Description
Name was updated August 2015: BORCS7 BLOC-1 related complex subunit 7
Related to position of lysosomes and cell migration/spreading
Mouse Phenotype
Additional Image
Allen Brain
Allen Regions
Zfin In Situ
Zfin Brain Areas
Published Zebrafish Pehnotype
Not In Allen Brain
False
ZFIN Link
None
Allen Link
None
More Additional Images
Papers
http://www.ncbi.nlm.nih.gov/pubmed/25898167/

Locus Rank

Locus Rank
3
Genes in Region
ARL3, AS3MT, C10orf32, CNNM2, CYP17A1, INA, NT5C2, PCGF6, PDCD11, SFXN2, TAF5, TRIM8, USMG5, WBP1L
Associated Snps
rs11191419 (shown), chr10_104957618_I, rs7907645, rs55833108
GWAS Region (hg19)
chr10:104423800-105165583
Genes Skipping
AS3MT, NT5C2, PCGF6, PDCD11, SFXN2, TAF5, TRIM8, USMG5, WBP1L
Ricopili Plot Surrounding Area
Distance On Each Side Of Locus In Above Plot
0.2 MB
Ricopili Plot
Gwas And Surrounding Region Pic
Gwas Region Pic
Genes In Locus Rank
NT5C2
CYP17A1
C10ORF32
CNNM2
INA
ARL3

Sequence 1

Ensembl Gene Name
borc7
Harvard Allele
a240
Mutation Area - WT DNA Sequence
cacaaatggcagttaaatgtgtcagatacataaaaatatcgtcactcgagttcgcttttaaattgtcccttgcctgctgccatagtAAACAGTAATGGCTTCCTCCGAAACGCAGCCCCGCTTCGGTCAATCTGTCAAAGGTTTATTGTCTGATAAAGTAACTTCTTGCAGTGGAGATGTGATCGCTTTAACTCGTCAAGTGTTAAAAGGATCCCGGAGCCAAGAAgtaaatatacgacacattatctgaagtgatattgtttggttaaggcgagatgttcgcctggctgatgttaactgtttctttctcatagcaattagcttaatagtcgagacgagcttcataacttaataagaggcttagacttttttgaaaaagcatagactttaacttagatactgggatactgagcactatatgacactgggcactacgtgatgtccagaacagctgtctcgaggttttgagacgacaaggcgcattaatactgcatcaagtgatgattcagttgacaatataaaaataatgttaacattgagctcttcttctttatagCTACTCAGTCAGGCAGCGAGAAATATGGTCATTCAGGAAGATGCCATTCTCCATTCCGAAGATgtaagtgaaataattatatgtgtatatacaggggttggacaataaaactgaaacgtttgggtttagaccacaataattcattagtatggtttaggacctccttttaagcttaggaatgacagatacaagtcctgtgcagtggccaaaaggattttgagcccttctcc
Mutation Area - Mutant DNA Sequence
CACAAATGGCAGTTAAATGTGTCAGATACATAAAAATATCGTCACTCGAGTTCGCTTTTAAATTGTCCCTTGCCTGCTGCCGTAGTAAACAGTAATGGCTTCCTCCGAAACGCAGCCCCGCTTCGGTCAATGGAGATGTGATCGCTTTAACTCGTCAAGTGTTAAAAGGATCCCGGAGCCAAGAAgtaaatatacgacacattatctgaagtgatattgtttggttaaggcgag
Guide RNA Target Sites
TTGACAGATTGACCGAAGCGGGG
GATAAAGTAACTTCTTGCAGTGG
ttctttatagCTACTCAGTCAGG
tacATCTTCGGAATGGAGAATGG
Genotyping Primers
f, cacaaatggcagttaaatgtgtcagatac
r, ctcgccttaaccaaacaatatcacttcag
Alignment of WT and Mutant Sequences w/ gRNA Targets (cyan) and Genotyping Primers (pink) Shown on WT Sequence
Allele
41bpD
WT Genotyping Size
275
WT Protein Sequence
MASSETQPRFGQSVKGLLSDKVTSCSGDVIALTRQVLKGSRSQELLSQAARNMVIQEDAI
LHSEDSLRKMSIITTHLQYQQEAIQKNVEHSKNLQDQLRHLMK-
Mutant Protein Sequence
MASSETQPRFGQWRCDRFNSSSVKRIPEPRTTQSGSEKYGHSGRCHSPFRR-
Mutant Genotyping Size
234
Ribosome Profiling Development

Behavior Data

Behavior Data Summary
None
Behavior Data Description 1
Dark flash block 1 start Merged section Pvalue = not significant 15 wt vs 15 hom ribgraph_mean_ribbon_fullboutdata_dpix_a0darkflash103.png
Behavior Data Graph 1
Behavior Data Description 2
Day all prepulse tap Merged section Pvalue = not significant 15 wt vs 15 hom ribgraph_mean_ribbon_fullboutdata_dpix_dayprepulseinhibition100d.png
Behavior Data Graph 2
Behavior Data Description 3
Features of movement entire protocol Graph Pvalue = 0.00207 Merged section Pvalue = 0.0163 18 het vs 26 hom ribgraph_mean_ribbonbout_aveboutdisp_10min_combo.png
Behavior Data Graph 3
Behavior Data Description 4
Frequency of movement entire protocol Graph Pvalue = 0.0401 Merged section Pvalue = not significant 15 wt vs 15 hom ribgraph_mean_ribbonbout_dpixnumberofbouts_10min_combo.png
Behavior Data Graph 4
Behavior Data Description 5
Location in well entire protocol Graph Pvalue = not significant Merged section Pvalue = not significant 15 wt vs 15 hom ribgraph_mean_ribbonbout_averhofrac_10min_combo.png
Behavior Data Graph 5
Behavior Data Description 6
Features of movement Graph Pvalue = 0.003 27 het vs 15 hom ribgraph_mean_ribbonbout_dpixavebouttime_min_day1morntrans.png
Behavior Data Graph 6
Behavior Data Description 7
Weak tap Graph Pvalue = 0.00924 15 wt vs 15 hom boxgraph_pd__smallmovesribgraph_mean_ribbon_speedresponse_dist_shortnightprepulseinhibition100a.png
Behavior Data Graph 7
Behavior Data Description 8
None
Behavior Data Graph 8
None
Behavior Data Description 9
None
Behavior Data Graph 9
None
Behavior Data Description 10
None
Behavior Data Graph 10
None
Behavior Data Description 11
None
Behavior Data Graph 11
None
Behavior Data Description 12
None
Behavior Data Graph 12
None
Behavior Data Description 13
None
Behavior Data Graph 13
None
Behavior Data Description 14
None
Behavior Data Graph 14
None